PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016472823.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 262aa    MW: 28564.7 Da    PI: 8.7994
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016472823.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00021107129123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+ksF +   L  H  +H
  XP_016472823.1 107 YKCSVCNKSFASYQALGGHKASH 129
                     9***********99998888877 PP

2zf-C2H212.30.00053159181123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F++   L  H r+H
  XP_016472823.1 159 HECSICHKYFPTGQALGGHKRRH 181
                     78*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.89E-7106181No hitNo description
PROSITE profilePS5015711.011107134IPR007087Zinc finger, C2H2
PfamPF139123.5E-13107130IPR007087Zinc finger, C2H2
SMARTSM003550.005107129IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
PfamPF139122.7E-11159183IPR007087Zinc finger, C2H2
SMARTSM003550.19159181IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.556159186IPR007087Zinc finger, C2H2
PROSITE patternPS000280161181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MALEALKSPT TESTPTIPPI YDQVNLDSNT KRKRSKRPRN EIQPTEEEFL ALCLIMLARS  60
GGGRTNSTHH DNITTTTTAA VQQQKKQITN DPLPREDQEA LIEQHSYKCS VCNKSFASYQ  120
ALGGHKASHR NKHSTTTATT VSDDNSTSTT SLNPSGRSHE CSICHKYFPT GQALGGHKRR  180
HYEGKIIGGG GGSREAGGSH TVISSEAGGS ARTVRDFDLN LPPPPEFSLG LTVDCRGKSQ  240
LSSEREVESP MPTKKPRLYF SD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016472823.10.0PREDICTED: zinc finger protein ZAT10-like
TrEMBLQ408983e-94Q40898_PETHY; Zinc-finger DNA binding protein
STRINGPGSC0003DMT4000847517e-75(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.14e-38salt tolerance zinc finger